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Fig. 4 | Genome Biology

Fig. 4

From: CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis

Fig. 4

CRISPRO 3D structure maps. a PLK1, PDB ID: 5TA6. Mapped scores are DLD1 z-score (LOESS interpolation) of PLK1 (protein kinase domain, AA37-330, cartoon presentation in the left panel, surface presentation in the right panel) in complex with 5,6-dihydroimidazolo[1,5-f]pteridine inhibitor (green). Zinc ion is displayed as a gray sphere. b PLK1, PDB ID 3FVH. Mapped scores are DLD1 z-score (LOESS interpolation) of PLK1 (polo box domain, AA368-604) in complex with Ac-LHSpTA-NH2 peptide. Both surface (right) and cartoon (left) presentation shown. C) AURKA with TPX2, PDB ID 3E5A. Mapped scores are NCI-H1299 z-score (LOESS interpolation) of AURKA (presented as surface in left panels, right as a cartoon, AA125-389, protein kinase domain) and TPX2 (presented solely as cartoon, AAs 6ā€“21, 26ā€“42, Aurora-A binding domain) in complex with VX680, an ATP-competitive small molecule inhibitor. Sulfate ions are displayed as gray spheres. d BRAF and MAP2K1, PDB ID 4MNE. Mapped scores A375 selumetinib (LOESS interpolation) of BRAF (surface in left panel, cartoon in right, AAs 449ā€“464, 469ā€“722, protein kinase domain) and MAP2K1 (cartoon in left panel, surface in right, AAs 62ā€“274, 307ā€“382, protein kinase domain). Ligands ACP in yellow, and 7-fluoro-3-[(2-fluoro-4-iodophenyl)amino]-N-{[(2S)-2-hydroxypropyl]oxy}furo[3,2-c]pyridine-2-carboxamide in green. Magnesium ion is displayed as a gray sphere

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