Table 1 List of genes involved in motility that are altered with quiescence
From: Alternative polyadenylation factors link cell cycle to migration
Type of change (analysis) | Genes |
|---|---|
Differential expression (DESeq) | KISS1, ACTC1, PODXL, RLTPR, PDPN, PALM, MYLIP, DNALI1, ADRA2A, KAL1, LYPD3, TNFRSF12A, ARHGDIB, ACTR3, ACTG1, MSN, PAK4, ARHGDIA, ACTB, TUBB, PTGS2, TPM1, PLAUR, TPM3 |
Alternative splicing (rMATS) | FYN, HGF, CD44, MAP4, ATP2B4, MYLK, ACTN1, SCARB1, FGFR1, FAT1, MYL6, TSPO, AKT2, BRAT1, ARHGAP21, GTPBP4, SOD2, FN1, WIPF1, CD58, KIF17, ITGB1BP1, GLIPR2, CALD1, LRP1, KLC1, KTN1, CHN1, POSTN, NUMB, ENPP2, KIF13A, TPM1, CLTC, MINK1, SH3KBP1, CACNA1C, DAB2, THY1, NCK1, SHC1, NFASC, IL17RC, LAMB2, PTPRM, GAS6, CCDC125, LAMA2, FLNA, SPTAN1, TPM2, CDC42BPB |
UTR-type alternative polyadenylation for 2pA site-containing genes | MACF1, LMNA, DDR2, LAMC1, NAV1, PEX13, ACTR2, IL1R1, MYO1B, SP100, TRAK1, NCK1, OPA1, PDGFRA, AP3S1, TUBB, PTP4A1, FGFR1OP, ANLN, GLIPR2, AMOTL1, PTPN11, MMP14, FRMD6, SMAD3, DYNLL2, PTPRA, DOK5, COL18A1, SSX2IP, NRAS, CERS2, SDC1, DPP4, DYNC1LI1, MAP4, WNT5A, CD47, DPYSL3, LAMA4, ARHGAP18, CITED2, GNA12, STC1, EXT1, AP3M1, BLOC1S2, RRAS2, TBX5, SYNJ2BP, EMP2, AMFR, STAT3, COL1A1, CCBE1, AP3D1, SDC4, APP, RBFOX2, MYH9, RAP2C |
Upstream region-type alternative polyadenylation for 2 pA site-containing genes | RDX, PEX14, DYNC2LI1, SUN1, RECK, IQGAP1, DOCK7 |