Original assembly | |||
Stats | Budgie | Ostrich | Saker falcon |
No. scaffolds longer 10 kbp | 1138 | 1179 | 731 |
Total length (Gbp) | 1.08 | 1.22 | 1.17 |
N50 (Mbp) | 11.41 | 3.64 | 4.16 |
Default RACA assembly | |||
Stats | Budgerigar PCFs | Ostrich PCFs | Saker falcon PCFs |
No. PCFs | 84 | 100 | 95 |
Total length (Gbp) | 1.04 | 1.17 | 1.14 |
N50 (Mbp) | 46.54 | 37.95 | 39.38 |
No. chimeric scaffolds | 80 (31%) | 58 (10%) | 50 (10%) |
No. used scaffolds | 254 | 588 | 458 |
% original assembly | 96.29 | 95.90 | 97.26 |
RACA + PCR assembly | |||
Stats | Budgerigar PCFs | Ostrich PCFs | Saker falcon PCFs |
No. PCFs | 95 | 136 | 103 |
Total length (Gbp) | 1.04 | 1.17 | 1.14 |
N50 (Mbp) | 37.96 | 28.09 | 22.28 |
No. chimeric scaffolds | 55 (21%) | 31 (5%) | 25 (5%) |
No. used scaffolds | 254 | 588 | 458 |
% original assembly | 96.29 | 96.02 | 97.26 |
RACA + FISH assembly | |||
Stats | Budgerigar chromosomes | Ostrich chromosomes | Saker falcon chromosomes |
No. PCFs placed | 46 | 53 | 64 |
No. PCFs oriented | 28 | 37 | 37 |
Disagreements RACA-FISH | 4 | 0 | 0 |
Length placed (bp) | 1,013,720,408 | 969,537,146 | 1,055,312,481 |
Length oriented (bp) | 844,433,024 | 869,521,333 | 790,725,803 |
% original assembly placed | 93.56 | 79.45 | 90.12 |
% original assembly oriented | 77.93 | 71.26 | 67.52 |