Table 6 Runs and species for testing running time performance
From: SKESA: strategic k-mer extension for scrupulous assemblies
SRA run | Species |
|---|---|
SRR2820668 | Achromobacter xylosoxidans |
SRR2822445 | Achromobacter xylosoxidans |
SRR2821368 | Achromobacter xylosoxidans |
SRR2821369 | Achromobacter xylosoxidans |
SRR2823707 | Bartonella bacilliformis |
SRR2823715 | Bordetella bronchiseptica |
SRR2823716 | Bordetella bronchiseptica |
SRR2824043 | Bordetella pertussis |
SRR2822462 | Citrobacter amalonaticus |
SRR2818794 | Citrobacter amalonaticus |
SRR1284629 | Citrobacter freundii |
SRR2821773 | Citrobacter sp. |
SRR1515967 | Enterobacter cloacae |
SRR1576778 | Enterobacter cloacae complex |
SRR1576808 | Enterobacter cloacae complex |
SRR2822449 | Enterococcus sp. |
ERR008613 | Escherichia coli |
ERR022075 | Escherichia coli |
SRR530851 | Escherichia coli |
SRR587217 | Escherichia coli |
SRR2817810 | Grimontia hollisae |
SRR2817811 | Grimontia hollisae |
SRR2822309 | Hafnia alvei |
ERR351267 | Helicobacter pylori |
SRR2821438 | Klebsiella aerogenes |
SRR2820617 | Klebsiella aerogenes |
SRR2820618 | Klebsiella aerogenes |
SRR1501122 | Klebsiella oxytoca |
SRR1427234 | Klebsiella pneumoniae |
SRR1505904 | Klebsiella pneumoniae |
SRR1427243 | Klebsiella pneumoniae |
SRR1501128 | Klebsiella pneumoniae |
SRR1510963 | Klebsiella pneumoniae |
SRR941212 | Mannheimia haemolytica |
SRR2823701 | Morganella morganii |
SRR2822442 | Pantoea agglomerans |
SRR2820663 | Providencia stuartii |
SRR498276 | Salmonella enterica |
SRR2814419 | Salmonella enterica |
SRR2814420 | Salmonella enterica |
SRR2819198 | Serratia liquefaciens |
SRR2812569 | Shigella sonnei |
SRR2812570 | Shigella sonnei |
SRR1206476 | Staphylococcus aureus |
SRR2822404 | Staphylococcus aureus |
SRR2820641 | Staphylococcus lugdunensis |
SRR2820657 | Staphylococcus lugdunensis |
SRR2822469 | Staphylococcus saprophyticus |
SRR2820294 | Staphylococcus saprophyticus |
SRR2819094 | Staphylococcus simulans |
SRR2820674 | Streptococcus pyogenes |
SRR2815879 | Vibrio fluvialis |
SRR2817447 | Vibrio harveyi |
SRR2818033 | Vibrio mimicus |
SRR2818092 | Vibrio parahaemolyticus |
SRR2818127 | Vibrio vulnificus |