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Table 5 Contiguity for benchmark, random, and contamination sets

From: SKESA: strategic k-mer extension for scrupulous assemblies

Benchmark set
N50 measure SKESA SPAdes MegaHit
<=10 Kb 14 69 19
10001−50 Kb 40 41 46
50001−100 Kb 41 56 67
100001−250 Kb 191 169 197
250001−500 Kb 77 43 48
> 500 Kb 18 3 4
Median 170,647 117,340 124,833
Minimum 1832 364 687
Maximum 1,197,860 622,367 617,087
Average 195,141 131,823 146,706
N50 statistic in contamination set
Contamination SKESA SPAdes MegaHit
None 282,763 260,531 202,384
3x 282,763 260,531 202,384
6x 282,763 260,532 202,384
9x 225,630 260,531 151,916
12x 77,455 260,531 107,175
15x 42,440 260,531 65,124
Random set
N50 measure SKESA SPAdes MegaHit
<=10 Kb 6 10 6
10001−50 Kb 349 206 285
50001−100 Kb 788 409 1516
100001−250 Kb 2307 2369 2889
250001−500 Kb 1324 1616 266
> 500 Kb 226 390 38
Median 170,877 208,907 117,074
Minimum 2414 209 4182
Maximum 1,545,488 1,530,182 1,499,532
Average 213,847 255,079 136,339