Table 4 Deviation of assembly length produced by the assemblers from the assembly length of the reference as computed using aligned length reported by QUAST and assembly lengths for benchmark and contamination sets
From: SKESA: strategic k-mer extension for scrupulous assemblies
Benchmark set | |||
Measure | SKESA | SPAdes | MegaHit |
Median | 2.72 | 10.91 | 5.59 |
Maximum | 135.75 | 775.14 | 407.78 |
Average | 4.61 | 57.98 | 24.23 |
Deviation in contamination set | |||
Contamination | SKESA | SPAdes | MegaHit |
None | 1.33 | 1.68 | 1.35 |
3x | 1.36 | 1.68 | 1.33 |
6x | 1.33 | 1.68 | 1.30 |
9x | 1.36 | 1.67 | 1.47 |
12x | 1.41 | 1.68 | 2.05 |
15x | 1.44 | 1.68 | 2.96 |