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Table 3 Mismatches per 100 Kb as reported by QUAST for benchmark and contamination sets

From: SKESA: strategic k-mer extension for scrupulous assemblies

Benchmark set
Measure SKESA SPAdes MegaHit
Median 0.08 2.76 1.89
Maximum 7.78 41.60 31.94
Average 0.40 3.21 2.79
Assembly counts in benchmark set
Mismatches range SKESA SPAdes MegaHit
0 105 1 1
0.01−1 247 40 80
1.01−2 9 76 121
2.01−3 9 89 58
3.01−4 1 71 45
> 4 10 104 76
Mismatches reported in contamination set
Set SKESA SPAdes MegaHit
No contamination 0 1.44 3.83
3x contamination 0 1.42 3.21
6x contamination 0 1.44 3.02
9x contamination 0.02 1.61 4.38
12x contamination 0.02 1.52 4.96
15x contamination 0.04 1.50 5.83