Table 1 Run time comparison using 56 inputs in the run time set
From: SKESA: strategic k-mer extension for scrupulous assemblies
Run time | 4 cores, 16 Gb | 8 cores, 32 Gb | 12 cores, 32 Gb | ||||||
|---|---|---|---|---|---|---|---|---|---|
(seconds) | SKESA | SPAdes | MegaHit | SKESA | SPAdes | MegaHit | SKESA | SPAdes | MegaHit |
<=300 | 6 | 1 | 6 | 16 | 2 | 24 | 32 | 3 | 37 |
301−400 | 3 | 0 | 2 | 16 | 1 | 12 | 11 | 3 | 11 |
401−500 | 5 | 2 | 8 | 7 | 3 | 7 | 2 | 1 | 5 |
501−600 | 6 | 1 | 10 | 6 | 1 | 8 | 3 | 3 | 0 |
601−700 | 10 | 1 | 6 | 0 | 3 | 2 | 3 | 3 | 0 |
> 700 | 26 | 51 | 24 | 11 | 46 | 3 | 5 | 43 | 3 |
Median | 688 | 2303 | 616 | 359 | 1319 | 328 | 275 | 1086 | 240 |