Skip to main content
Fig. 4 | Genome Biology

Fig. 4

From: Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Fig. 4

Cluster separation and identification from scRNAseq data. a t-SNE plot of major cell clusters identified by Seurat. b Clusters corresponding to epithelial progenitors, neoblasts, neurons, gut, and muscles were identified based on the expression of known tissue-specific markers. c t-SNE plot and in situ hybridization for the cathepsin+ a/b-enriched cathepsin L homolog, Smed-CTSL2. d Re-clustering cathepsin+ a/b cells resolves 4 subclusters, with distinct expression patterns shown in t-SNE plots and by in situ hybridization in e

Back to article page

Genome Biology

ISSN: 1474-760X

Contact us