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Fig. 2 | Genome Biology

Fig. 2

From: Comparative transcriptomic analyses and single-cell RNA sequencing of the freshwater planarian Schmidtea mediterranea identify major cell types and pathway conservation

Fig. 2

Abundant Pfam families. a Comparative distribution of top 20 Pfam families in S. mediterranea and the ranks of these families in model organisms and closely related Platyhelminthes in terms of their abundance. The total number of transcripts for each of the species in these 20 families is indicated in the last row. Pfam families of particular interest are indicated in boxes. b Age distribution of DDE transposons: the classification and distribution of repeat elements in transcripts of the highly abundant DDE Pfam families is shown, along with a representation of the extent of sequence divergence of these elements from their consensus. c Phylogenetic distribution of cadherins from human, C. elegans, Platyhelminthes, and S. mediterranea. Clades with bootstrap support of > 600/1000 are collapsed and colored by the taxonomic representation of the species in each clade, while the number of transcripts mapping to the clade is indicated at the edge. d Whole-mount in situ hybridization of Smed-calsyntenin. Cross sections (right) are from anterior (top), pharyngeal (middle), and tail (bottom) regions. e dFISH of a single confocal slice through the brain demonstrating co-expression of chat in Smed-calsyntenin + neurons

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Genome Biology

ISSN: 1474-760X

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