TY - JOUR AU - Nelson, S. B. AU - Sugino, K. AU - Hempel, C. M. PY - 2006 DA - 2006// TI - The problem of neuronal cell types: a physiological genomics approach JO - Trends Neurosci VL - 29 UR - https://doi.org/10.1016/j.tins.2006.05.004 DO - 10.1016/j.tins.2006.05.004 ID - Nelson2006 ER - TY - JOUR AU - Hobert, O. AU - Carrera, I. AU - Stefanakis, N. PY - 2010 DA - 2010// TI - The molecular and gene regulatory signature of a neuron JO - Trends Neurosci VL - 33 UR - https://doi.org/10.1016/j.tins.2010.05.006 DO - 10.1016/j.tins.2010.05.006 ID - Hobert2010 ER - TY - JOUR AU - Fishell, G. AU - Heintz, N. PY - 2013 DA - 2013// TI - The neuron identity problem: form meets function JO - Neuron VL - 80 UR - https://doi.org/10.1016/j.neuron.2013.10.035 DO - 10.1016/j.neuron.2013.10.035 ID - Fishell2013 ER - TY - JOUR AU - Darnell, R. B. PY - 2013 DA - 2013// TI - RNA protein interaction in neurons JO - Annu Rev Neurosci VL - 36 UR - https://doi.org/10.1146/annurev-neuro-062912-114322 DO - 10.1146/annurev-neuro-062912-114322 ID - Darnell2013 ER - TY - JOUR AU - Buckanovich, R. J. AU - Posner, J. B. AU - Darnell, R. B. PY - 1993 DA - 1993// TI - Nova, the paraneoplastic Ri antigen, is homologous to an RNA-binding protein and is specifically expressed in the developing motor system JO - Neuron VL - 11 UR - https://doi.org/10.1016/0896-6273(93)90077-5 DO - 10.1016/0896-6273(93)90077-5 ID - Buckanovich1993 ER - TY - JOUR AU - Taliaferro, J. M. AU - Vidaki, M. AU - Oliveira, R. AU - Olson, S. AU - Zhan, L. AU - Saxena, T. PY - 2016 DA - 2016// TI - Distal alternative last exons localize mRNAs to neural projections JO - Mol Cell VL - 61 UR - https://doi.org/10.1016/j.molcel.2016.01.020 DO - 10.1016/j.molcel.2016.01.020 ID - Taliaferro2016 ER - TY - JOUR AU - Zhang, X. AU - Chen, M. H. AU - Wu, X. AU - Kodani, A. AU - Fan, J. AU - Doan, R. PY - 2016 DA - 2016// TI - Cell-type-specific alternative splicing governs cell fate in the developing cerebral cortex JO - Cell VL - 166 UR - https://doi.org/10.1016/j.cell.2016.07.025 DO - 10.1016/j.cell.2016.07.025 ID - Zhang2016 ER - TY - JOUR AU - Zhang, Y. AU - Chen, K. AU - Sloan, S. A. AU - Bennett, M. L. AU - Scholze, A. R. AU - O'Keeffe, S. PY - 2014 DA - 2014// TI - An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex JO - J Neurosci VL - 34 UR - https://doi.org/10.1523/JNEUROSCI.1860-14.2014 DO - 10.1523/JNEUROSCI.1860-14.2014 ID - Zhang2014 ER - TY - JOUR AU - Cahoy, J. D. AU - Emery, B. AU - Kaushal, A. AU - Foo, L. C. AU - Zamanian, J. L. AU - Christopherson, K. S. PY - 2008 DA - 2008// TI - A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function JO - J Neurosci VL - 28 UR - https://doi.org/10.1523/JNEUROSCI.4178-07.2008 DO - 10.1523/JNEUROSCI.4178-07.2008 ID - Cahoy2008 ER - TY - JOUR AU - Sanz, E. AU - Yang, L. AU - Su, T. AU - Morris, D. R. AU - McKnight, G. S. AU - Amieux, P. S. PY - 2009 DA - 2009// TI - Cell-type-specific isolation of ribosome-associated mRNA from complex tissues JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0907143106 DO - 10.1073/pnas.0907143106 ID - Sanz2009 ER - TY - JOUR AU - Heiman, M. AU - Kulicke, R. AU - Fenster, R. J. AU - Greengard, P. AU - Heintz, N. PY - 2014 DA - 2014// TI - Cell type-specific mRNA purification by translating ribosome affinity purification (TRAP) JO - Nat Protoc VL - 9 UR - https://doi.org/10.1038/nprot.2014.085 DO - 10.1038/nprot.2014.085 ID - Heiman2014 ER - TY - JOUR AU - Heiman, M. AU - Schaefer, A. AU - Gong, S. AU - Peterson, J. D. AU - Day, M. AU - Ramsey, K. E. PY - 2008 DA - 2008// TI - A translational profiling approach for the molecular characterization of CNS cell types JO - Cell VL - 135 UR - https://doi.org/10.1016/j.cell.2008.10.028 DO - 10.1016/j.cell.2008.10.028 ID - Heiman2008 ER - TY - JOUR AU - Doyle, J. P. AU - Dougherty, J. D. AU - Heiman, M. AU - Schmidt, E. F. AU - Stevens, T. R. AU - Ma, G. PY - 2008 DA - 2008// TI - Application of a translational profiling approach for the comparative analysis of CNS cell types JO - Cell VL - 135 UR - https://doi.org/10.1016/j.cell.2008.10.029 DO - 10.1016/j.cell.2008.10.029 ID - Doyle2008 ER - TY - JOUR AU - Jensen, K. B. AU - Musunuru, K. AU - Lewis, H. A. AU - Burley, S. K. AU - Darnell, R. B. PY - 2000 DA - 2000// TI - The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain JO - Proc Natl Acad Sci U S A VL - 97 UR - https://doi.org/10.1073/pnas.090553997 DO - 10.1073/pnas.090553997 ID - Jensen2000 ER - TY - JOUR AU - Ule, J. AU - Ule, A. AU - Spencer, J. AU - Williams, A. AU - Hu, J. -. S. AU - Cline, M. PY - 2005 DA - 2005// TI - Nova regulates brain-specific splicing to shape the synapse JO - Nat Genet VL - 37 UR - https://doi.org/10.1038/ng1610 DO - 10.1038/ng1610 ID - Ule2005 ER - TY - JOUR AU - Licatalosi, D. D. AU - Mele, A. AU - Fak, J. J. AU - Ule, J. AU - Kayikci, M. AU - Chi, S. W. PY - 2008 DA - 2008// TI - HITS-CLIP yields genome-wide insights into brain alternative RNA processing JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07488 DO - 10.1038/nature07488 ID - Licatalosi2008 ER - TY - JOUR AU - Ule, J. AU - Stefani, G. AU - Mele, A. AU - Ruggiu, M. AU - Wang, X. AU - Taneri, B. PY - 2006 DA - 2006// TI - An RNA map predicting Nova-dependent splicing regulation JO - Nature VL - 444 UR - https://doi.org/10.1038/nature05304 DO - 10.1038/nature05304 ID - Ule2006 ER - TY - JOUR AU - Moore, M. J. AU - Zhang, C. AU - Gantman, E. C. AU - Mele, A. AU - Darnell, J. C. AU - Darnell, R. B. PY - 2014 DA - 2014// TI - Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis JO - Nat Protoc VL - 9 UR - https://doi.org/10.1038/nprot.2014.012 DO - 10.1038/nprot.2014.012 ID - Moore2014 ER - TY - JOUR AU - Darnell, R. B. PY - 2010 DA - 2010// TI - HITS-CLIP: panoramic views of protein-RNA regulation in living cells JO - WIREs RNA VL - 1 UR - https://doi.org/10.1002/wrna.31 DO - 10.1002/wrna.31 ID - Darnell2010 ER - TY - JOUR AU - Zhang, C. AU - Frias, M. A. AU - Mele, A. AU - Ruggiu, M. AU - Eom, T. AU - Marney, C. B. PY - 2010 DA - 2010// TI - Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls JO - Science VL - 329 UR - https://doi.org/10.1126/science.1191150 DO - 10.1126/science.1191150 ID - Zhang2010 ER - TY - JOUR AU - Ruggiu, M. AU - Herbst, R. AU - Kim, N. AU - Jevsek, M. AU - Fak, J. J. AU - Mann, M. A. PY - 2009 DA - 2009// TI - Rescuing Z+ agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing JO - Proc Natl Acad Sci U S A VL - 106 UR - https://doi.org/10.1073/pnas.0813112106 DO - 10.1073/pnas.0813112106 ID - Ruggiu2009 ER - TY - JOUR AU - Huang, C. S. AU - Shi, S. -. H. AU - Ule, J. AU - Ruggiu, M. AU - Barker, L. A. AU - Darnell, R. B. PY - 2005 DA - 2005// TI - Common molecular pathways mediate long-term potentiation of synaptic excitation and slow synaptic inhibition JO - Cell VL - 123 UR - https://doi.org/10.1016/j.cell.2005.07.033 DO - 10.1016/j.cell.2005.07.033 ID - Huang2005 ER - TY - JOUR AU - Yano, M. AU - Hayakawa-Yano, Y. AU - Mele, A. AU - Darnell, R. B. PY - 2010 DA - 2010// TI - Nova2 regulates neuronal migration through an RNA switch in disabled-1 signaling JO - Neuron VL - 66 UR - https://doi.org/10.1016/j.neuron.2010.05.007 DO - 10.1016/j.neuron.2010.05.007 ID - Yano2010 ER - TY - STD TI - Saito Y, Miranda-Rottmann S, Ruggiu M, Park CY, Fak JJ, Zhong R, et al. NOVA2-mediated RNA regulation is required for axonal pathfinding during development. elife. 2016;5:e14371. ID - ref24 ER - TY - JOUR AU - Yang, Y. Y. AU - Yin, G. L. AU - Darnell, R. B. PY - 1998 DA - 1998// TI - The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia JO - Proc Natl Acad Sci U S A VL - 95 UR - https://doi.org/10.1073/pnas.95.22.13254 DO - 10.1073/pnas.95.22.13254 ID - Yang1998 ER - TY - JOUR AU - Charizanis, K. AU - Lee, K. Y. AU - Batra, R. AU - Goodwin, M. AU - Zhang, C. AU - Yuan, Y. PY - 2012 DA - 2012// TI - Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy JO - Neuron VL - 75 UR - https://doi.org/10.1016/j.neuron.2012.05.029 DO - 10.1016/j.neuron.2012.05.029 ID - Charizanis2012 ER - TY - JOUR AU - Shah, A. AU - Qian, Y. AU - Weyn-Vanhentenryck, S. M. AU - Zhang, C. PY - 2017 DA - 2017// TI - CLIP Tool Kit (CTK): a flexible and robust pipeline to analyze CLIP sequencing data JO - Bioinformatics VL - 33 ID - Shah2017 ER - TY - JOUR AU - Gong, S. AU - Doughty, M. AU - Harbaugh, C. R. AU - Cummins, A. AU - Hatten, M. E. AU - Heintz, N. PY - 2007 DA - 2007// TI - Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs JO - J Neurosci VL - 27 UR - https://doi.org/10.1523/JNEUROSCI.2707-07.2007 DO - 10.1523/JNEUROSCI.2707-07.2007 ID - Gong2007 ER - TY - JOUR AU - Robinson, M. D. AU - McCarthy, D. J. AU - Smyth, G. K. PY - 2010 DA - 2010// TI - edgeR: a Bioconductor package for differential expression analysis of digital gene expression data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp616 DO - 10.1093/bioinformatics/btp616 ID - Robinson2010 ER - TY - JOUR AU - Enjin, A. AU - Rabe, N. AU - Nakanishi, S. T. AU - Vallstedt, A. AU - Gezelius, H. AU - Memic, F. PY - 2010 DA - 2010// TI - Identification of novel spinal cholinergic genetic subtypes disclose Chodl and Pitx2 as markers for fast motor neurons and partition cells JO - J Comp Neurol VL - 518 UR - https://doi.org/10.1002/cne.22332 DO - 10.1002/cne.22332 ID - Enjin2010 ER - TY - JOUR AU - Kodama, T. AU - Guerrero, S. AU - Shin, M. AU - Moghadam, S. AU - Faulstich, M. AU - Lac du, S. PY - 2012 DA - 2012// TI - Neuronal classification and marker gene identification via single-cell expression profiling of brainstem vestibular neurons subserving cerebellar learning JO - J Neurosci VL - 32 UR - https://doi.org/10.1523/JNEUROSCI.0543-12.2012 DO - 10.1523/JNEUROSCI.0543-12.2012 ID - Kodama2012 ER - TY - JOUR AU - Vullhorst, D. AU - Neddens, J. AU - Karavanova, I. AU - Tricoire, L. AU - Petralia, R. S. AU - McBain, C. J. PY - 2009 DA - 2009// TI - Selective expression of ErbB4 in interneurons, but not pyramidal cells, of the rodent hippocampus JO - J Neurosci VL - 29 UR - https://doi.org/10.1523/JNEUROSCI.2454-09.2009 DO - 10.1523/JNEUROSCI.2454-09.2009 ID - Vullhorst2009 ER - TY - JOUR AU - Neddens, J. AU - Fish, K. N. AU - Tricoire, L. AU - Vullhorst, D. AU - Shamir, A. AU - Chung, W. PY - 2011 DA - 2011// TI - Conserved interneuron-specific ErbB4 expression in frontal cortex of rodents, monkeys, and humans: implications for schizophrenia JO - Biol Psychiatry VL - 70 UR - https://doi.org/10.1016/j.biopsych.2011.04.016 DO - 10.1016/j.biopsych.2011.04.016 ID - Neddens2011 ER - TY - JOUR AU - Rexed, B. PY - 1952 DA - 1952// TI - The cytoarchitectonic organization of the spinal cord in the cat JO - J Comp Neurol VL - 96 UR - https://doi.org/10.1002/cne.900960303 DO - 10.1002/cne.900960303 ID - Rexed1952 ER - TY - JOUR AU - Henry, A. M. AU - Hohmann, J. G. PY - 2012 DA - 2012// TI - High-resolution gene expression atlases for adult and developing mouse brain and spinal cord JO - Mamm Genome VL - 23 UR - https://doi.org/10.1007/s00335-012-9406-2 DO - 10.1007/s00335-012-9406-2 ID - Henry2012 ER - TY - JOUR AU - Bandyopadhyay, U. AU - Cotney, J. AU - Nagy, M. AU - Oh, S. AU - Leng, J. AU - Mahajan, M. PY - 2013 DA - 2013// TI - RNA-Seq profiling of spinal cord motor neurons from a presymptomatic SOD1 ALS mouse JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0053575 DO - 10.1371/journal.pone.0053575 ID - Bandyopadhyay2013 ER - TY - JOUR AU - Saarikangas, J. AU - Kourdougli, N. AU - Senju, Y. AU - Chazal, G. AU - Segerstråle, M. AU - Minkeviciene, R. PY - 2015 DA - 2015// TI - MIM-induced membrane bending promotes dendritic spine initiation JO - Dev Cell VL - 33 UR - https://doi.org/10.1016/j.devcel.2015.04.014 DO - 10.1016/j.devcel.2015.04.014 ID - Saarikangas2015 ER - TY - JOUR AU - Yu, N. AU - Signorile, L. AU - Basu, S. AU - Ottema, S. AU - Lebbink, J. H. G. AU - Leslie, K. PY - 2016 DA - 2016// TI - Isolation of functional tubulin dimers and of tubulin-associated proteins from mammalian cells JO - Curr Biol VL - 26 UR - https://doi.org/10.1016/j.cub.2016.04.069 DO - 10.1016/j.cub.2016.04.069 ID - Yu2016 ER - TY - JOUR AU - Lee, K. -. H. AU - Lee, J. S. AU - Lee, D. AU - Seog, D. -. H. AU - Lytton, J. AU - Ho, W. -. K. PY - 2012 DA - 2012// TI - KIF21A-mediated axonal transport and selective endocytosis underlie the polarized targeting of NCKX2 JO - J Neurosci VL - 32 UR - https://doi.org/10.1523/JNEUROSCI.6331-11.2012 DO - 10.1523/JNEUROSCI.6331-11.2012 ID - Lee2012 ER - TY - JOUR AU - Baines, A. J. AU - Lu, H. -. C. AU - Bennett, P. M. PY - 2014 DA - 2014// TI - The protein 4.1 family: hub proteins in animals for organizing membrane proteins JO - Biochim Biophys Acta VL - 1838 UR - https://doi.org/10.1016/j.bbamem.2013.05.030 DO - 10.1016/j.bbamem.2013.05.030 ID - Baines2014 ER - TY - JOUR AU - Al-Bassam, J. AU - Chang, F. PY - 2011 DA - 2011// TI - Regulation of microtubule dynamics by TOG-domain proteins XMAP215/Dis1 and CLASP JO - Trends Cell Biol VL - 21 UR - https://doi.org/10.1016/j.tcb.2011.06.007 DO - 10.1016/j.tcb.2011.06.007 ID - Al-Bassam2011 ER - TY - JOUR AU - Galjart, N. PY - 2005 DA - 2005// TI - CLIPs and CLASPs and cellular dynamics JO - Nat Rev Mol Cell Biol. VL - 6 UR - https://doi.org/10.1038/nrm1664 DO - 10.1038/nrm1664 ID - Galjart2005 ER - TY - JOUR AU - Zhang, Y. AU - Zhang, X. -. F. AU - Fleming, M. R. AU - Amiri, A. AU - El-Hassar, L. AU - Surguchev, A. A. PY - 2016 DA - 2016// TI - Kv3.3 channels bind Hax-1 and Arp2/3 to assemble a stable local actin network that regulates channel gating JO - Cell VL - 165 UR - https://doi.org/10.1016/j.cell.2016.02.009 DO - 10.1016/j.cell.2016.02.009 ID - Zhang2016 ER - TY - JOUR AU - Mattila, P. K. AU - Salminen, M. AU - Yamashiro, T. AU - Lappalainen, P. PY - 2003 DA - 2003// TI - Mouse MIM, a tissue-specific regulator of cytoskeletal dynamics, interacts with ATP-actin monomers through its C-terminal WH2 domain JO - J Biol Chem VL - 278 UR - https://doi.org/10.1074/jbc.M212113200 DO - 10.1074/jbc.M212113200 ID - Mattila2003 ER - TY - JOUR AU - Glassmann, A. AU - Molly, S. AU - Surchev, L. AU - Nazwar, T. A. AU - Holst, M. AU - Hartmann, W. PY - 2007 DA - 2007// TI - Developmental expression and differentiation-related neuron-specific splicing of metastasis suppressor 1 (Mtss1) in normal and transformed cerebellar cells JO - BMC Dev Biol VL - 7 UR - https://doi.org/10.1186/1471-213X-7-111 DO - 10.1186/1471-213X-7-111 ID - Glassmann2007 ER - TY - JOUR AU - Sistig, T. AU - Lang, F. AU - Wrobel, S. AU - Baader, S. L. AU - Schilling, K. AU - Eiberger, B. PY - 2017 DA - 2017// TI - Mtss1 promotes maturation and maintenance of cerebellar neurons via splice variant-specific effects JO - Brain Struct Funct VL - 222 UR - https://doi.org/10.1007/s00429-017-1372-8 DO - 10.1007/s00429-017-1372-8 ID - Sistig2017 ER - TY - JOUR AU - Goldman-Wohl, D. S. AU - Chan, E. AU - Baird, D. AU - Heintz, N. PY - 1994 DA - 1994// TI - Kv3.3b: a novel Shaw type potassium channel expressed in terminally differentiated cerebellar Purkinje cells and deep cerebellar nuclei JO - J. Neurosci VL - 14 UR - https://doi.org/10.1523/JNEUROSCI.14-02-00511.1994 DO - 10.1523/JNEUROSCI.14-02-00511.1994 ID - Goldman-Wohl1994 ER - TY - JOUR AU - Brooke, R. E. AU - Atkinson, L. AU - Edwards, I. AU - Parson, S. H. AU - Deuchars, J. PY - 2006 DA - 2006// TI - Immunohistochemical localisation of the voltage gated potassium ion channel subunit Kv3.3 in the rat medulla oblongata and thoracic spinal cord JO - Brain Res VL - 1070 UR - https://doi.org/10.1016/j.brainres.2005.10.102 DO - 10.1016/j.brainres.2005.10.102 ID - Brooke2006 ER - TY - JOUR AU - Gladfelter, A. S. AU - Bose, I. AU - Zyla, T. R. AU - Bardes, E. S. G. AU - Lew, D. J. PY - 2002 DA - 2002// TI - Septin ring assembly involves cycles of GTP loading and hydrolysis by Cdc42p JO - J Cell Biol VL - 156 UR - https://doi.org/10.1083/jcb.200109062 DO - 10.1083/jcb.200109062 ID - Gladfelter2002 ER - TY - JOUR AU - Sadian, Y. AU - Gatsogiannis, C. AU - Patasi, C. AU - Hofnagel, O. AU - Goody, R. S. AU - Farkasovský, M. PY - 2013 DA - 2013// TI - The role of Cdc42 and Gic1 in the regulation of septin filament formation and dissociation JO - elife VL - 2 UR - https://doi.org/10.7554/eLife.01085 DO - 10.7554/eLife.01085 ID - Sadian2013 ER - TY - JOUR AU - Kinoshita, M. PY - 2003 DA - 2003// TI - Assembly of mammalian septins JO - J Biochem VL - 134 UR - https://doi.org/10.1093/jb/mvg182 DO - 10.1093/jb/mvg182 ID - Kinoshita2003 ER - TY - JOUR AU - Weirich, C. S. AU - Erzberger, J. P. AU - Barral, Y. PY - 2008 DA - 2008// TI - The septin family of GTPases: architecture and dynamics JO - Nat Rev Mol Cell Biol. VL - 9 UR - https://doi.org/10.1038/nrm2407 DO - 10.1038/nrm2407 ID - Weirich2008 ER - TY - JOUR AU - Mostowy, S. AU - Cossart, P. PY - 2012 DA - 2012// TI - Septins: the fourth component of the cytoskeleton JO - Nat Rev Mol Cell Biol VL - 13 UR - https://doi.org/10.1038/nrm3284 DO - 10.1038/nrm3284 ID - Mostowy2012 ER - TY - JOUR AU - Tada, T. AU - Simonetta, A. AU - Batterton, M. AU - Kinoshita, M. AU - Edbauer, D. AU - Sheng, M. PY - 2007 DA - 2007// TI - Role of Septin cytoskeleton in spine morphogenesis and dendrite development in neurons JO - Curr Biol VL - 17 UR - https://doi.org/10.1016/j.cub.2007.09.039 DO - 10.1016/j.cub.2007.09.039 ID - Tada2007 ER - TY - JOUR AU - Xie, Y. AU - Vessey, J. P. AU - Konecna, A. AU - Dahm, R. AU - Macchi, P. AU - Kiebler, M. A. PY - 2007 DA - 2007// TI - The GTP-binding protein Septin 7 is critical for dendrite branching and dendritic-spine morphology JO - Curr Biol VL - 17 UR - https://doi.org/10.1016/j.cub.2007.08.042 DO - 10.1016/j.cub.2007.08.042 ID - Xie2007 ER - TY - JOUR AU - Hu, J. AU - Bai, X. AU - Bowen, J. R. AU - Dolat, L. AU - Korobova, F. AU - Yu, W. PY - 2012 DA - 2012// TI - Septin-driven coordination of actin and microtubule remodeling regulates the collateral branching of axons JO - Curr Biol VL - 22 UR - https://doi.org/10.1016/j.cub.2012.04.019 DO - 10.1016/j.cub.2012.04.019 ID - Hu2012 ER - TY - JOUR AU - Kang, R. AU - Wan, J. AU - Arstikaitis, P. AU - Takahashi, H. AU - Huang, K. AU - Bailey, A. O. PY - 2008 DA - 2008// TI - Neural palmitoyl-proteomics reveals dynamic synaptic palmitoylation JO - Nature VL - 456 UR - https://doi.org/10.1038/nature07605 DO - 10.1038/nature07605 ID - Kang2008 ER - TY - JOUR AU - Wan, J. AU - Savas, J. N. AU - Roth, A. F. AU - Sanders, S. S. AU - Singaraja, R. R. AU - Hayden, M. R. PY - 2013 DA - 2013// TI - Tracking brain palmitoylation change: predominance of glial change in a mouse model of Huntingto’s disease JO - Chem Biol VL - 20 UR - https://doi.org/10.1016/j.chembiol.2013.09.018 DO - 10.1016/j.chembiol.2013.09.018 ID - Wan2013 ER - TY - JOUR AU - Xie, Y. AU - Zheng, Y. AU - Li, H. AU - Luo, X. AU - He, Z. AU - Cao, S. PY - 2016 DA - 2016// TI - GPS-lipid: a robust tool for the prediction of multiple lipid modification sites JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep28249 DO - 10.1038/srep28249 ID - Xie2016 ER - TY - JOUR AU - Forrester, M. T. AU - Hess, D. T. AU - Thompson, J. W. AU - Hultman, R. AU - Moseley, M. A. AU - Stamler, J. S. PY - 2011 DA - 2011// TI - Site-specific analysis of protein S-acylation by resin-assisted capture JO - J Lipid Res VL - 52 UR - https://doi.org/10.1194/jlr.D011106 DO - 10.1194/jlr.D011106 ID - Forrester2011 ER - TY - JOUR AU - Antinone, S. E. AU - Ghadge, G. D. AU - Ostrow, L. W. AU - Roos, R. P. AU - Green, W. N. PY - 2017 DA - 2017// TI - S-acylation of SOD1, CCS, and a stable SOD1-CCS heterodimer in human spinal cords from ALS and non-ALS subjects JO - Sci Rep VL - 7 UR - https://doi.org/10.1038/srep41141 DO - 10.1038/srep41141 ID - Antinone2017 ER - TY - JOUR AU - Gauthier-Campbell, C. AU - Bredt, D. S. AU - Murphy, T. H. AU - El-Husseini, A. E. -. D. PY - 2004 DA - 2004// TI - Regulation of dendritic branching and filopodia formation in hippocampal neurons by specific acylated protein motifs JO - Mol Biol Cell VL - 15 UR - https://doi.org/10.1091/mbc.e03-07-0493 DO - 10.1091/mbc.e03-07-0493 ID - Gauthier-Campbell2004 ER - TY - JOUR AU - Abdel-Maguid, T. E. AU - Bowsher, D. PY - 1979 DA - 1979// TI - Alpha- and gamma-motoneurons in the adult human spinal cord and somatic cranial nerve nuclei: the significance of dendroachitectonics studied by the Golgi method JO - J Comp Neurol VL - 186 UR - https://doi.org/10.1002/cne.901860209 DO - 10.1002/cne.901860209 ID - Abdel-Maguid1979 ER - TY - BOOK AU - Paxinos, G. PY - 2012 DA - 2012// TI - The human nervous system PB - Academic Press CY - Cambridge ID - Paxinos2012 ER - TY - JOUR AU - Martin, E. AU - Cazenave, W. AU - Cattaert, D. AU - Branchereau, P. PY - 2013 DA - 2013// TI - Embryonic alteration of motoneuronal morphology induces hyperexcitability in the mouse model of amyotrophic lateral sclerosis JO - Neurobiol Dis VL - 54 UR - https://doi.org/10.1016/j.nbd.2013.02.011 DO - 10.1016/j.nbd.2013.02.011 ID - Martin2013 ER - TY - JOUR AU - Kato, T. AU - Hirano, A. AU - Donnenfeld, H. PY - 1987 DA - 1987// TI - A Golgi study of the large anterior horn cells of the lumbar cords in normal spinal cords and in amyotrophic lateral sclerosis JO - Acta Neuropathol VL - 75 UR - https://doi.org/10.1007/BF00686790 DO - 10.1007/BF00686790 ID - Kato1987 ER - TY - JOUR AU - Fu, X. -. D. AU - Ares, M. PY - 2014 DA - 2014// TI - Context-dependent control of alternative splicing by RNA-binding proteins JO - Nat Publ Group VL - 15 ID - Fu2014 ER - TY - JOUR AU - Polydorides, A. D. AU - Okano, H. J. AU - Yang, Y. Y. AU - Stefani, G. AU - Darnell, R. B. PY - 2000 DA - 2000// TI - A brain-enriched polypyrimidine tract-binding protein antagonizes the ability of Nova to regulate neuron-specific alternative splicing JO - Proc Natl Acad Sci U S A VL - 97 UR - https://doi.org/10.1073/pnas.110128397 DO - 10.1073/pnas.110128397 ID - Polydorides2000 ER - TY - JOUR AU - Buckanovich, R. J. AU - Yang, Y. Y. AU - Darnell, R. B. PY - 1996 DA - 1996// TI - The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies JO - J Neurosci VL - 16 UR - https://doi.org/10.1523/JNEUROSCI.16-03-01114.1996 DO - 10.1523/JNEUROSCI.16-03-01114.1996 ID - Buckanovich1996 ER - TY - JOUR AU - Schaefer, A. AU - Im, H. -. I. AU - Venø, M. T. AU - Fowler, C. D. AU - Min, A. AU - Intrator, A. PY - 2010 DA - 2010// TI - Argonaute 2 in dopamine 2 receptor-expressing neurons regulates cocaine addiction JO - J Exp Med VL - 207 UR - https://doi.org/10.1084/jem.20100451 DO - 10.1084/jem.20100451 ID - Schaefer2010 ER - TY - JOUR AU - Tan, C. L. AU - Plotkin, J. L. AU - Venø, M. T. AU - von Schimmelmann, M. AU - Feinberg, P. AU - Mann, S. PY - 2013 DA - 2013// TI - MicroRNA-128 governs neuronal excitability and motor behavior in mice JO - Science VL - 342 UR - https://doi.org/10.1126/science.1244193 DO - 10.1126/science.1244193 ID - Tan2013 ER - TY - JOUR AU - Bahn, J. H. AU - Ahn, J. AU - Lin, X. AU - Zhang, Q. AU - Lee, J. -. H. AU - Civelek, M. PY - 2015 DA - 2015// TI - Genomic analysis of ADAR1 binding and its involvement in multiple RNA processing pathways JO - Nat Commun VL - 6 UR - https://doi.org/10.1038/ncomms7355 DO - 10.1038/ncomms7355 ID - Bahn2015 ER - TY - JOUR AU - Beltran, M. AU - Yates, C. M. AU - Skalska, L. AU - Dawson, M. AU - Reis, F. P. AU - Viiri, K. PY - 2016 DA - 2016// TI - The interaction of PRC2 with RNA or chromatin is mutually antagonistic JO - Genome Res VL - 26 UR - https://doi.org/10.1101/gr.197632.115 DO - 10.1101/gr.197632.115 ID - Beltran2016 ER - TY - JOUR AU - Hwang, H. -. W. AU - Park, C. Y. AU - Goodarzi, H. AU - Fak, J. J. AU - Mele, A. AU - Moore, M. J. PY - 2016 DA - 2016// TI - PAPERCLIP identifies MicroRNA targets and a role of CstF64/64tau in promoting non-canonical poly(A) site usage JO - Cell Rep VL - 15 UR - https://doi.org/10.1016/j.celrep.2016.03.023 DO - 10.1016/j.celrep.2016.03.023 ID - Hwang2016 ER - TY - JOUR AU - Hwang, H. -. W. AU - Saito, Y. AU - Park, C. Y. AU - Blachère, N. E. AU - Tajima, Y. AU - Fak, J. J. PY - 2017 DA - 2017// TI - cTag-PAPERCLIP reveals alternative polyadenylation promotes cell-type specific protein diversity and shifts Araf isoforms with microglia activation JO - Neuron VL - 95 UR - https://doi.org/10.1016/j.neuron.2017.08.024 DO - 10.1016/j.neuron.2017.08.024 ID - Hwang2017 ER - TY - JOUR AU - Pramatarova, A. AU - Laganière, J. AU - Roussel, J. AU - Brisebois, K. AU - Rouleau, G. A. PY - 2001 DA - 2001// TI - Neuron-specific expression of mutant superoxide dismutase 1 in transgenic mice does not lead to motor impairment JO - J Neurosci VL - 21 UR - https://doi.org/10.1523/JNEUROSCI.21-10-03369.2001 DO - 10.1523/JNEUROSCI.21-10-03369.2001 ID - Pramatarova2001 ER - TY - JOUR AU - Lino, M. M. AU - Schneider, C. AU - Caroni, P. PY - 2002 DA - 2002// TI - Accumulation of SOD1 mutants in postnatal motoneurons does not cause motoneuron pathology or motoneuron disease JO - J Neurosci VL - 22 UR - https://doi.org/10.1523/JNEUROSCI.22-12-04825.2002 DO - 10.1523/JNEUROSCI.22-12-04825.2002 ID - Lino2002 ER - TY - JOUR AU - Boillée, S. AU - Vande Velde, C. AU - Cleveland, D. W. PY - 2006 DA - 2006// TI - ALS: a disease of motor neurons and their nonneuronal neighbors JO - Neuron VL - 52 UR - https://doi.org/10.1016/j.neuron.2006.09.018 DO - 10.1016/j.neuron.2006.09.018 ID - Boillée2006 ER - TY - JOUR AU - Phatnani, H. P. AU - Guarnieri, P. AU - Friedman, B. A. AU - Carrasco, M. A. AU - Muratet, M. AU - O'Keeffe, S. PY - 2013 DA - 2013// TI - Intricate interplay between astrocytes and motor neurons in ALS JO - Proc Natl Acad Sci U S A VL - 110 UR - https://doi.org/10.1073/pnas.1222361110 DO - 10.1073/pnas.1222361110 ID - Phatnani2013 ER - TY - JOUR AU - Weyn-Vanhentenryck, S. M. AU - Mele, A. AU - Yan, Q. AU - Sun, S. AU - Farny, N. AU - Zhang, Z. PY - 2014 DA - 2014// TI - HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism JO - Cell Rep VL - 6 UR - https://doi.org/10.1016/j.celrep.2014.02.005 DO - 10.1016/j.celrep.2014.02.005 ID - Weyn-Vanhentenryck2014 ER - TY - JOUR AU - Gong, S. AU - Yang, X. W. AU - Li, C. AU - Heintz, N. PY - 2002 DA - 2002// TI - Highly efficient modification of bacterial artificial chromosomes (BACs) using novel shuttle vectors containing the R6Kgamma origin of replication JO - Genome Res VL - 12 UR - https://doi.org/10.1101/gr.476202 DO - 10.1101/gr.476202 ID - Gong2002 ER - TY - JOUR AU - Zhang, C. AU - Darnell, R. B. PY - 2011 DA - 2011// TI - Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data JO - Nat Biotechnol VL - 29 UR - https://doi.org/10.1038/nbt.1873 DO - 10.1038/nbt.1873 ID - Zhang2011 ER - TY - JOUR AU - Darnell, J. C. AU - Van Driesche, S. J. AU - Zhang, C. AU - Hung, K. Y. S. AU - Mele, A. AU - Fraser, C. E. PY - 2011 DA - 2011// TI - FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism JO - Cell VL - 146 UR - https://doi.org/10.1016/j.cell.2011.06.013 DO - 10.1016/j.cell.2011.06.013 ID - Darnell2011 ER - TY - JOUR AU - Wu, J. AU - Anczuków, O. AU - Krainer, A. R. AU - Zhang, M. Q. AU - Zhang, C. PY - 2013 DA - 2013// TI - OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds JO - Nucleic Acids Res VL - 41 UR - https://doi.org/10.1093/nar/gkt216 DO - 10.1093/nar/gkt216 ID - Wu2013 ER - TY - JOUR AU - Eden, E. AU - Navon, R. AU - Steinfeld, I. AU - Lipson, D. AU - Yakhini, Z. PY - 2009 DA - 2009// TI - GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists JO - BMC Bioinformatics VL - 10 UR - https://doi.org/10.1186/1471-2105-10-48 DO - 10.1186/1471-2105-10-48 ID - Eden2009 ER - TY - STD TI - Yuan Y, Phatnani H, Maniatis T, Darnell RB. Cell type-specific HITS-CLIP reveals differential RNA processing in motor neurons. NCBI GEO. https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71294. Accessed 4 July 2018. UR - https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71294 ID - ref86 ER -