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Fig. 2 | Genome Biology

Fig. 2

From: Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data

Fig. 2

Screenshots of the web interfaces for a practical use case to explore all the genomic data in the vicinity of a dedicated gene and find out if there are genetic studies pointing to this genomic region. Search the gene name (e.g. TraesCS5A01G033100) in the data discovery tool (1A, [5]) or BLAST the sequence of the gene against IWGSC RefSeq v1.0 (1B, [30]). The results are displayed in Tables (2A, 2B) with links to JBrowse directly zooming in on the gene [48]. Explore the region around the gene to find a marker (3, e.g. wPt-4131_PURr). By clicking on the marker, display additional information stored in GnpIS-coreDB (4, [49]) showing that the marker is used in GWAS experiments (5A, [50]) and is linked to a QTL (5B, e.g. GY_ml.8.Np_5A, [51]). From the trait description of this QTL (6, [52]), display all the phenotyping experiments performed on this trait (7, e.g. grain yield, [53])

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