From: ChromTime: modeling spatio-temporal dynamics of chromatin marks
System | Chromatin marks | Species | Number of time points | Reference |
---|---|---|---|---|
Adipogenesis | H3K4me2 | Mouse | 4 | [18] |
H3K4me3 | Human | Â | Â | |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
H3K36me3 | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
Blood formation | H3K4me2 | Mouse | 5–7 | [19] |
H3K4me3 | Â | Â | Â | |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
ATAC-seq | Â | Â | Â | |
Blood formation | ATAC-seq | Human | 5 | [20] |
Fetal brain development | DNase-seq | Human | 3 | [7] |
Cardiac development | H3K4me3 | Mouse | 4 | [23] |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
H3K36me3 | Â | Â | Â | |
Pol2 | Â | Â | Â | |
Cardiac development | H3K4me3 | Human | 5 | [22] |
H3K27me3 | Â | Â | Â | |
H3K36me3 | Â | Â | Â | |
Embryogenesis | H3K4me3 | Zebrafish | 4 | [28] |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
Macrophage differentiation | H3K4me3 | Mouse | 5 | [21] |
H3K9ac | Â | Â | Â | |
H3K27ac | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
Neural differentiation | H3K4me3 | Human | 5 | [12] |
H3K27ac | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
Stem cell reprogramming | H3K4me2 | Human | 4–6 | [24] |
H3K4me3 | Â | Â | Â | |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
H3K36me3 | Â | Â | Â | |
Stem cell reprogramming | H3K4me2 | Mouse | 4 | [27] |
H3K4me3 | Â | Â | Â | |
H3K9ac | Â | Â | Â | |
H3K27ac | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
H3K36me3 | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
H3K79me2 | Â | Â | Â | |
H3K9me3 | Â | Â | Â | |
ATAC-seq | Â | Â | Â | |
Stem cell reprogramming | H3K4me3 | Mouse | 9 | [25] |
H3K27ac | Â | Â | Â | |
H3K4me1 | Â | Â | Â | |
H3K27me3 | Â | Â | Â | |
Pol2 | Â | Â | Â | |
T-cell development | H3K4me2 | Mouse | 5 | [17] |
H3K(9,14)ac | Â | Â | Â | |
H3K27me3 | Â | Â | Â |