From: Impact of transposable elements on genome structure and evolution in bread wheat
A | B | D | Complete genome | |
---|---|---|---|---|
Class 1 LTR retrotransposons | ||||
Gypsy (RLG) | 50.9% | 46.8% | 41.4% | 46.7% |
Copia (RLC) | 17.5% | 16.2% | 16.3% | 16.7% |
Unclassified LTR-RT (RLX) | 2.6% | 3.5% | 3.7% | 3.2% |
Non-LTR retrotransposons | ||||
LINE (RIX) | 0.82% | 0.96% | 0.93% | 0.90% |
SINE (RSX) | 0.01% | 0.01% | 0.01% | 0.01% |
Class 2 DNA transposons | ||||
CACTA (DTC) | 12.8% | 15.5% | 19.0% | 15.5% |
Mutator (DTM) | 0.30% | 0.38% | 0.48% | 0.38% |
Unclassified with TIRs (DTX) | 0.21% | 0.20% | 0.22% | 0.21% |
Harbinger (DTH) | 0.15% | 0.16% | 0.18% | 0.16% |
Mariner (DTT) | 0.14% | 0.16% | 0.17% | 0.16% |
Unclassified class 2 (DXX) | 0.05% | 0.08% | 0.05% | 0.06% |
hAT (DTA) | 0.01% | 0.01% | 0.01% | 0.01% |
Helitrons (DHH) | 0.00% | 0.00% | 0.00% | 0.00% |
Unclassified repeats (XXX) | 0.55% | 0.85% | 0.63% | 0.68% |
Genes and non TE-related DNA | 13.9% | 15.3% | 16.8% | 15.2% |