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Table 2 Marker-trait associations of HvARM1 and HvPUB15 in diverse collections of cultivated H. vulgare ssp. vulgare

From: Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance

Gene Populationa Traitb Markerc Minus log(p)d Holm corr. pe
HvARM1 WHEALBI_LRC PM_ max_2_isol rel_Rol H02 2.893 0.0051
HvARM1 WHEALBI_LRC PM_ max_2_isol rel_MRX H02 2.848 0.0057
HvARM1 WHEALBI_LRC PM_JKI_75_rel_MRX H02 2.418 0.0153
HvARM1 WHEALBI_LRC PM_ max_2_isol rel_Rol S3H_594732776 2.893 0.0051
HvARM1 WHEALBI_LRC PM_ max_2_isol rel_MRX S3H_594732776 2.848 0.0057
HvARM1 WHEALBI_LRC PM_JKI_75_rel_MRX S3H_594732776 2.418 0.0153
HvARM1 WHEALBI_CULT PM_JKI_75_rel_Rol S3H_594731277 3.826 0.0006
HvARM1 WHEALBI_CULT PM_JKI_75_rel_MRX S3H_594731277 3.460 0.0014
HvARM1 WHEALBI_CULT PM_ max_2_isol rel_MRX S3H_594731277 3.374 0.0017
HvARM1 WHEALBI_CULT PM_JKI_75_rel_Rol H01 3.826 0.0004
HvARM1 WHEALBI_CULT PM_JKI_75_rel_MRX H01 3.460 0.0010
HvARM1 WHEALBI_CULT PM_ max_2_isol rel_MRX H01 3.374 0.0013
HvPUB15 WHEALBI_LRC PM_JKI_242_rel_Rol H10 0.871 0.5379
HvPUB15 WHEALBI_LRC PM_JKI_242_rel_Rol H11 0.684 0.6203
HvPUB15 WHEALBI_LRC PM_ max_2_isol rel_MRX H10 0.599 1
HvPUB15 WHEALBI_LRC PM_JKI_242_rel_Rol S3H_689574119 0.814 1
HvPUB15 WHEALBI_LRC PM_JKI_242_rel_Rol S3H_689574678 0.814 1
HvPUB15 WHEALBI_LRC PM_JKI_242_rel_Rol S3H_689575062 0.814 1
HvPUB15 WHEALBI_CULT PM_ max_2_isol rel_Rol S3H_689573944 1.055 1
HvPUB15 WHEALBI_CULT PM_JKI_75_rel_Rol S3H_689573944 1.002 1
HvPUB15 WHEALBI_CULT PM_JKI_75_rel_MRX S3H_689573776 0.925 1
HvPUB15 WHEALBI_CULT PM_JKI_75_rel_MRX H10 0.511 0.926
HvPUB15 WHEALBI_CULT PM_ max_2_isol rel_MRX H10 0.372 1
HvPUB15 WHEALBI_CULT PM_ max_2_isol rel_Rol H11 0.359 1
  1. Significantly associated SNP- as well as gene-haplotype polymorphisms are indicated in bold
  2. aCULT cultivars, LRC landraces
  3. bThree different powdery mildew (PM) traits were recorded: (1) infection caused by isolate JKI_75 relative to internal reference genotypes Morex (MRX) or Roland (Rol), (2) infection caused by isolate JKI_242 relative to MRX or Rol, (3) maximum infection caused by either isolate relative to MRX or Rol
  4. cPer population and gene the three most significant haplotype-trait as well as SNP-trait associations are shown; H haplotype, S SNP
  5. dNegative log(10) of p value for the null hypothesis of a marker-trait association
  6. eValues > 1 of multiple-testing corrected p values are replaced by 1; number of SNPs or haplotypes per gene = number of tests.