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Fig. 6 | Genome Biology

Fig. 6

From: dropEst: pipeline for accurate estimation of molecular counts in droplet-based single-cell RNA-seq experiments

Fig. 6

Filtration of low-quality cells for the inDrop mouse BMC dataset. This figure shows the result of the KDE-based algorithm for filtration of low-quality cells in the inDrop mouse BMC dataset (dataset 11). a, b Similar to Fig. 4b, c, the heatmap shows expression of cluster-specific genes in cells with high quality scores (> 0.9) that were identified above the size-based threshold (a), and “rescued” below the size-based threshold (b). c t-SNE visualization of the dataset, similar to Fig. 5a

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