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Fig. 4 | Genome Biology

Fig. 4

From: BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process

Fig. 4

Synthetic data: effect of Monocle global state estimation on BEAM and BGP model predictions for early-branching genes. b=0.2. Two different examples are shown, corresponding to accurate and inaccurate state estimation by Monocle. b, c, e, f Gene expression (vertical axis) vs pseudotime (horizontal axis). The vertical black bar is the global branching time. The vertical red bar is the BEAM branching time estimate and the vertical blue bar the BGP estimate. Cells have been coloured by the global Monocle assignment. a, d The Monocle-DDRTree latent space. BEAM branch expression analysis modelling, BGP branching Gaussian process

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Genome Biology

ISSN: 1474-760X

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