Table 3 Number of genes with selected models for large-scale datasets on the GemCode and Chromium platforms
From: UMI-count modeling and differential expression analysis for single-cell RNA sequencing
NB vs ZINB | Poisson vs NB | |||||||
|---|---|---|---|---|---|---|---|---|
Data | Cells used (n) | Genes detected (n) | Genes tested (n) | Genes converged (n) | ZINB | NB | Poisson | Poisson (%) |
Naive T cells (Gemcode) | 9850 | 32,738 | 11,978 | 11,977 | 7 | 5336 | 6634 | 55.39 |
Memory T cells (Gemcode) | 9578 | 32,738 | 12,569 | 12,567 | 4 | 6336 | 6227 | 49.55 |
Rh41 (Chromium) | 6875 | 33,416 | 18,435 | 18,435 | 39 | 9387 | 9009 | 48.87 |