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Fig. 1 | Genome Biology

Fig. 1

From: UMI-count modeling and differential expression analysis for single-cell RNA sequencing

Fig. 1

Scatter plots of two cells with similar read counts or UMI counts. a, b Read counts for Smart−Seq2. c, d Read counts for CEL − Seq2/C1. e, f UMI counts for CEL − Seq2/C1. a, c, e The scatter plot with color-coded density, the highest density at the origin. The left and middle panels, which are based on the read counts, show very different patterns from the right panel, which is based on the UMI counts. b, d, f The density plot along the x- and y-axes of (a), (c), and (e), excluding the origin. For all plots, we kept the genes that were detected in at least five cells among all cells

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