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Fig. 7 | Genome Biology

Fig. 7

From: Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing

Fig. 7

Comparison of Primed and Naïve-like H9 at single-cell level. a scRNA-seq t-SNE plot of Primed and Naïve-like H9. Naïve-like H9 was selected from day 20 Reset H9. b Violin plots show the expression level distributions of pluripotent transcription factors (POU5F1, NANOG, and SOX2). c Heatmap shows the distinct gene expression pattern of Primed and Naïve-like H9. Top 20 differential genes are shown. Genes used are listed in Additional file 10: Table S9. df Violin plots show the expression level distributions of primed genes (d), naïve genes (e), and MAPK related genes (f)

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