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Table 1 Summary of TSV predictions for HCC1954 and HCC1395 cell lines

From: SQUID: transcriptomic structural variation detection from RNA-seq

Method SQUID FusionCatcher JAFFA deFuse INTEGRATE SOAPfuse Pipeline
HCC1954 Fusion-gene predictions 46 54 67 95 67 177 2118
  Fusion-gene hits 7 5 4 12 10 5 4
  Non-fusion-gene predictions 46 0 0 83 0 0 1080
  Non-fusion-gene hits 7 0 0 5 0 0 11
HCC1395 Fusion-gene predictions 44 42 44 110 61 185 2413
  Fusion-gene hits 11 11 16 15 16 19 23
  Non-fusion-gene predictions 57 0 0 121 0 0 1185
  Non-fusion-gene hits 9 0 0 7 0 0 8