Table 1 Accuracy of predicted secondary structures using the Weeks set
From: PATTERNA: transcriptome-wide search for functional RNA elements via structural data signatures
| Â | Raw | Log transformed | Fragmented | |||
|---|---|---|---|---|---|---|
| Â | â„“1-norm | Accuracy [%] | â„“1-norm | Accuracy [%] | â„“1-norm | Accuracy [%] |
Optimized cutoff | 2843 | 73.0 | 2810 | 73.3 | – | – |
patteRNA - Viterbi | 2916 | 72.3 | 2939 | 72.1 | – | – |
patteRNA - posteriors | 2962.3 | 71.9 | 2981.9 | 71.7 | – | – |
MFE | 2406 | 77.2 | – | – | 2964 | 71.9 |
MFE+SP | 1890 | 82.1 | – | – | 2588 | 75.4 |