Skip to main content

Table 2 Summary of unique Pfam domains found in NLR-ID MIC1 (C16) clade and neighboring clades, C14 and C15

From: Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions

  Across all clades in tree Neighboring clade (C14, C15) MIC1 clade (C16)
Species Total NLR-ID genes (n) Non-redundant ID domains (n) Non-redundant ID domains (n) Non-redundant ID domains (n) Unique domains
S. italica 9 7 0 2 NAM, WRKY
S. bicolor 22 13 0 4 WRKY, HLH, NAM, Glutaredoxin
Z. mays 7 8 0 0 -
O. sativa 18 16 0 3 AvrRpt-cleavage, Thioredoxin, DUF761,
B. distachyon 16 9 0 7 AP2, Jacalin
Myb_DNA-binding, Pkinase, Pkinase_Tyr, WRKY
H. vulgare 27 19 0 12 AvrRpt-cleavage, B3,
DUF581, Exo70, Glutaredoxin, Kelch_1, PP2C, Pkinase, Pkinase_Tyr, PP2C WRKY, zf-LSD1
A. tauschii (D) 67 32 2 8 AvrRpt-cleavage, B3, Kelch_1, Pkinase, Pkinase_Tyr, RVT_2, WRKY, p450
T. aestivum subgenomes: 133 46 4 21 AP2, Ank_2, Ank_5, B3, BTB, CG-1, DUF3420, DUF793, Exo70, GRAS, Kelch_1, Myb_DNA-binding, NPR1_like_C, PGG, PP2C, Pkinase, Pkinase_Tyr, RIP, TIG, WRKY, zf-RING_2
A 35 20 2 13
B 50 28 3 8
D 34 23 2 13
Unanchored 14 9 2 4
T. urartu (A) 32 25 4 9 B3, CG-1, EF_hand_5, Exo70. Kelch_1, PP2C, Pkinase, Pkinase_Tyr, RVT_3
Average 37 19 1 7 -
  1. Only domains with e-value < 1e-3 are shown. For the full list of domains with lower stringency (e-value < 0.05), see Additional file 2 and 14