Table 2 Summary of unique Pfam domains found in NLR-ID MIC1 (C16) clade and neighboring clades, C14 and C15
Across all clades in tree | Neighboring clade (C14, C15) | MIC1 clade (C16) | |||
|---|---|---|---|---|---|
Species | Total NLR-ID genes (n) | Non-redundant ID domains (n) | Non-redundant ID domains (n) | Non-redundant ID domains (n) | Unique domains |
S. italica | 9 | 7 | 0 | 2 | NAM, WRKY |
S. bicolor | 22 | 13 | 0 | 4 | WRKY, HLH, NAM, Glutaredoxin |
Z. mays | 7 | 8 | 0 | 0 | - |
O. sativa | 18 | 16 | 0 | 3 | AvrRpt-cleavage, Thioredoxin, DUF761, |
B. distachyon | 16 | 9 | 0 | 7 | AP2, Jacalin Myb_DNA-binding, Pkinase, Pkinase_Tyr, WRKY |
H. vulgare | 27 | 19 | 0 | 12 | AvrRpt-cleavage, B3, DUF581, Exo70, Glutaredoxin, Kelch_1, PP2C, Pkinase, Pkinase_Tyr, PP2C WRKY, zf-LSD1 |
A. tauschii (D) | 67 | 32 | 2 | 8 | AvrRpt-cleavage, B3, Kelch_1, Pkinase, Pkinase_Tyr, RVT_2, WRKY, p450 |
T. aestivum subgenomes: | 133 | 46 | 4 | 21 | AP2, Ank_2, Ank_5, B3, BTB, CG-1, DUF3420, DUF793, Exo70, GRAS, Kelch_1, Myb_DNA-binding, NPR1_like_C, PGG, PP2C, Pkinase, Pkinase_Tyr, RIP, TIG, WRKY, zf-RING_2 |
A | 35 | 20 | 2 | 13 | |
B | 50 | 28 | 3 | 8 | |
D | 34 | 23 | 2 | 13 | |
Unanchored | 14 | 9 | 2 | 4 | |
T. urartu (A) | 32 | 25 | 4 | 9 | B3, CG-1, EF_hand_5, Exo70. Kelch_1, PP2C, Pkinase, Pkinase_Tyr, RVT_3 |
Average | 37 | 19 | 1 | 7 | - |