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Table 4 HLA typing performance on 11 individuals from the 1000 Genomes Project

From: Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

  Class I Class II
  A B C DQA1 DQB1 DRB1
PHLAT (two-digit) 0.82 (18/22) 0.82 (18/22) 0.91 (20/22) 0.83 (10/12) 1.00 (22/22) 0.95 (21/22)
PHLAT (four-digit P) 0.68 (15/22) 0.55 (12/22) 0.77 (17/22) 0.83 (10/12) 0.95 (21/22) 0.82 (18/22)
HLA*PRG (six-digit G) 1.00 (22/22) 1.00 (22/22) 1.00 (22/22) 1.00 (12/12) 1.00 (22/22) 0.95 (21/22)
Kourami (six-digit G) 1.00 (22/22) 1.00 (22/22) 1.00 (22/22) 1.00 (12/12) 1.00 (22/22) 1.00 (22/22)
  1. Accuracy is shown as a fraction. The fraction of the number of correctly typed alleles and the total number of alleles tested are shown in parentheses