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Table 4 HLA typing performance on 11 individuals from the 1000 Genomes Project

From: Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

 

Class I

Class II

 

A

B

C

DQA1

DQB1

DRB1

PHLAT (two-digit)

0.82 (18/22)

0.82 (18/22)

0.91 (20/22)

0.83 (10/12)

1.00 (22/22)

0.95 (21/22)

PHLAT (four-digit P)

0.68 (15/22)

0.55 (12/22)

0.77 (17/22)

0.83 (10/12)

0.95 (21/22)

0.82 (18/22)

HLA*PRG (six-digit G)

1.00 (22/22)

1.00 (22/22)

1.00 (22/22)

1.00 (12/12)

1.00 (22/22)

0.95 (21/22)

Kourami (six-digit G)

1.00 (22/22)

1.00 (22/22)

1.00 (22/22)

1.00 (12/12)

1.00 (22/22)

1.00 (22/22)

  1. Accuracy is shown as a fraction. The fraction of the number of correctly typed alleles and the total number of alleles tested are shown in parentheses