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Table 3 Trio consistency over 12 trios in Platinum Genomes

From: Kourami: graph-guided assembly for novel human leukocyte antigen allele discovery

 

Class I

Class II

 

A

B

C

DQA1

DQB1

DRB1

PHLAT (two-digit)

1.00 (24/24)

0.71 (17/24)

1.00 (24/24)

0.79 (19/24)

1.00 (24/24)

0.96 (23/24)

PHLAT (four-digit P)

0.67 (16/24)

0.42 (10/24)

1.00 (24/24)

0.79 (19/24)

1.00 (24/24)

0.46 (11/24)

HLA*PRG (six-digit G)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

Kourami

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

1.00 (24/24)

  1. Trio consistency is shown as a fraction. The number of consistent alleles is shown as a fraction in parentheses