Fig. 2

a DNA methylation levels in percent at individual cytosines located in autosomes across all or within each individual sequence context (CG, CHG, CHH) for each tissue type used in this study shown as violin plots (see Additional file 1: Figure S1 for data from individual replicates). The horizontal black bars correspond to the means (see Additional file 1: Tables S2 and S3). b Average DNA methylation levels in percent for each sequence context, genomic feature, and tissue type shown as a heatmap (see Additional file 1: Table S4, S5, S6, and S7). US/DS upstream/downstream of a gene, UTR untranslated region, snRNA small nucleolar RNA, rRNA ribosomal RNA, sat satellite repeat, telo. sat telomeric satellite repeats, simple simple repeats, ukn. unknown/unclassified repeats, SINE short interspersed nuclear elements, LINE long interspersed nuclear elements, RC rolling circle transposon, LTR-TE retrotransposon with long terminal repeats, DNA-TE DNA transposon, uncl. not classified into a subfamily. *Note that for the “female gametes,” we sampled archegonia, which are entire gametangia that harbor the egg cells