Table 3 Assignment rules for differentially expressed contigs
From: DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition
Conditions | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Event class | DU P value | Number of junctions | Maps gene | Maps antisense gene | Clipped 3’ | Is mapped | SNV | Exonic | Intronic | Number of hits | Contig length | Other rules | Contigs | Loci |
Splicing | >0 | T | T | F | 1 | 1879 | 1280 | |||||||
Splicing DU | <0.01 | >0 | T | T | F | 1 | 391 | 345 | ||||||
PolyA | ≥5 | T | 1 | 1 | 105 | 95 | ||||||||
PolyA DU | <0.01 | T | ≥5 | T | 1 | 1 | 9 | 8 | ||||||
lincRNA | F | F | T | 1 | >200 | 1061 | 329 | |||||||
asRNA | F | T | T | 1 | >200 | 479 | 180 | |||||||
SNV DU | <0.01 | T | F | T | T | T | 1 | 2 | 929 | 680 | ||||
Intron | T | F | 0 | T | T | 1 | 3 | 49897 | 6689 | |||||
Intron DU | <0.01 | T | F | 0 | T | T | 1 | 3 | 10688 | 3128 | ||||
Repeats | T | ≥5 | >50 | 4 | 1136 | 612 | ||||||||
Unmapped | F | >50 | 112 | |||||||||||