Skip to main content

Advertisement

Fig. 8 | Genome Biology

Fig. 8

From: DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Fig. 8

Validation of DE-kupl events across independent data sets. Altogether, 550 differentially expressed contigs from six different event classes (intron with differential usage, lincRNA, polyA site, repeat, splice site, and unmapped) were identified using DE-kupl on GTEx libraries from two human tissues (skin and colon). A representative k-mer from each contig was then tested for differential expression in the skin and colon libraries in the Human Protein Atlas. Box plots represent distributions of DESeq2 adjusted p values for all k-mers in the different classes. The red line shows the adjusted p value cutoff of 0.05. DU differential usage, lincRNA long intergenic non-coding RNA, padj adjusted p value, polyA polyadenylation

Back to article page