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Fig. 5 | Genome Biology

Fig. 5

From: DE-kupl: exhaustive capture of biological variation in RNA-seq data through k-mer decomposition

Fig. 5

Specificity of differentially expressed contigs. a Density plot of contig lengths for mapped and unmapped contigs. The red line indicates contigs built from k k-mers and likely corresponding to SNVs. b Mismatch ratio (number of mismatches/contig size) as a function of contig length. c Number of hits in the reference genome as a function of contig length. The b and c curves were obtained using a smoothing function. SNV single-nucleotide variation

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