Table 1 Comparison of results obtained with MICRA, MIRA and IonGAP
MICRA with DH10B | MICRA without DH10B | MIRA | IonGAP | |
|---|---|---|---|---|
Time | 9 minutes | 11 minutes | 3 h | >3 h |
Number of contigs > 500 bp | 1 | 41 | 267 | 197 |
N50 | 4686138 | 2836109 | 88618 | 121061 |
Genome fraction (%) | 100 | 97.195 | 96.314 | 96.752 |
Number of Ns | 2 | 91 | 89 | 4 |
Number of mismatches | 1 | 73 | 147 | 116 |
Number of short indels | 1 | 17 | 63 | 64 |
Number of long indels | 0 | 5 | 5 | 0 |
Number of genes | 4127 + 0 part | 4019 + 7 part | 3919 + 106 part | 3927 + 95 part |
Number of misassemblies | 0 | 19 | 5 | 9 |