Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Table 2 Genetic features of TSP sites

Orthologous gene (A. th)	Site label	Position in A. th	r ² (A. th/C. ru)	π^a (A. th/C. ru)	MAF (A. th/C. ru)
AT1G35220	TSP-1	Chr 1: 12913634	1/1	0.036 (<2.2E-16)/0.037(<2.2E-16)	0.432/0.217
AT1G35220	TSP-2	Chr 1: 12913648	1/1	0.036 (<2.2E-16)/0.037(<2.2E-16)	0.432/0.217
AT2G16570	TSP-3	Chr 2: 7180661	0.92/1	0.017 (2.9E-9)/0.019 (5.9E-10)	0.198/0.261
AT2G16570	TSP-4	Chr 2: 7180598	0.92/1	0.017 (2.9E-9)/0.019 (5.9E-10)	0.185/0.261
AT4G29360	TSP-5	Chr 4: 14452628	1/1	0.009 (1.8E-4)/0.034 (<2.2E-16)	0.062/0.434
AT4G29360	TSP-6	Chr 4: 14452661	1/1	0.009 (1.8E-4)/0.034 (<2.2E-16)	0.062/0.434
AT5G38460	TSP-7	Chr 5: 15399653	0.55/0.86	0.007 (0.34)/0.031 (6.4E-3)	0.099/0.261
AT5G38460	TSP-8	Chr 5: 15399591	0.55/0.86	0.007 (0.34)/0.031 (6.4E-3)	0.086/0.391
AT5G44000	TSP-9	Chr 5: 17702574	1/1	0.010 (1.4E-10)/0.023 (<2.2E-16)	0.074/0.174
AT5G44000	TSP-10	Chr 5: 17702547	1/1	0.010 (1.4E-10)/0.023 (<2.2E-16)	0.074/0.174

^aValues are the averages of the corresponding values in all 100 bp windows covering the TSP sites in strong linkage disequilibrium that could yield an allelic tree, and their associated FDR-adjusted P values are listed in parentheses

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