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Table 1 Information on the candidate genes and TSP sites

From: Long-term balancing selection contributes to adaptation in Arabidopsis and its relatives

Orthologous A. th gene Orthologous C. ru gene Positions in A. th Positions in C. ru SNP annotation CpG statusa A1 A2 A2 frequency (A. th) A2 frequency (C. ru)
AT1G35220 Carubv10011082m Chr 1: 12913634 Scaffold 1: 12353061 Intron No: TGC-TTC G T 46/81 5/23
Chr 1: 12913648 Scaffold 1: 12353075 Intron No: GAA-GGA A G 46/81 5/23
AT2G16570 Carubv10015505m Chr 2: 7180661 Scaffold 3: 12816152 S No: ACA-ATA C T 65/81 6/23
Chr 2: 7180598 Scaffold 3: 12816089 S Yes: TTG-TCG T C 66/81 6/23
AT4G29360 Carubv10007158m Chr 4: 14452628 Scaffold 7: 4284494 S Yes: CGG-CCG C G 5/81 13/23
Chr 4: 14452661 Scaffold 7: 4284527 S Yes: CGG-CAG A G 5/81 13/23
AT5G38460 Carubv10004565m Chr 5: 15399653 Scaffold 7: 17116466 M No: TTC-TGC T G 8/81 17/23
Chr 5: 15399591 Scaffold 7: 17116528 S No: TGC-TAC G A 7/81 14/23
AT5G44000 Carubv10026474m Chr 5: 17702574 Scaffold 8: 1942064 S No: TTA-TCA T C 75/81 4/23
Chr 5: 17702547 Scaffold 8: 1942091 S No: AGT-AAT G A 75/81 4/23
  1. aTrinucleotides centered on the TSP sites are listed