Fig. 3
From: McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes
Mapping enhancer candidates from DNase-seq data and baseline classifications. a JAMM-identified peaks for DHSs in stage 14, versus (b) originally processed DHSs in stage 14. Heatmaps are centered on DHS midpoint, ranked by peak width and show extended read count intensity. c Size of all DHSs that overlap TSSs and those overlapping other regions along the genome. d Normalized GC content per each group of DHSs. e Area under receiver operating characteristic curve (AuROC) for classification of various simple baseline methods for distal DHS-gene assignment