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Fig. 6 | Genome Biology

Fig. 6

From: Splatter: simulation of single-cell RNA sequencing data

Fig. 6

Evaluation of SC3 results. Metrics for the evaluation of clustering (a) include the Rand index, Hubert and Arabie’s adjusted Rand index (HA), Morey and Agresti’s adjusted Rand index (MA), Fowlkes and Mallows index (FM), and the Jaccard index. Detection of differentially expressed and marker genes were evaluated (b) using accuracy, recall (true positive rate), precision, F1 score (harmonic mean of precision and recall), and false positive rate (FPR). All of the metrics are presented here as boxplots across the 20 simulations

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