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Fig. 4 | Genome Biology

Fig. 4

From: Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

Fig. 4

Modelling the TF network controlling germination. Simplified DREM model annotated with TFs based on DAP-seq binding data. Only the top three TFs (strongest associations) and summary of TF families involved are shown. In order to simplify the model only four time points were used to calculate the log2 fold changes of DEGs relative to 0 h: 12 h S, 48 h S, 12 h S L and 48 h S L. Transcriptionally upregulated TFs are coloured in blue, downregulated TFs are shown in red. The full model is presented in Additional file 2: Figure S3

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