Table 4 Overhead of the Qtip tool
From: A tandem simulation framework for predicting mapping quality
| Time (minutes) | Peak memory (gigabytes) | |||||||
|---|---|---|---|---|---|---|---|---|
| Time | +Qtip | % inc | Memory | +Qtip | % inc | |||
| ERR050082 | Unpaired | Bowtie 2 | 23.58 | 25.20 | 6.89 | 3.26 | 3.52 | 8.25 |
| BWA-MEM | 22.18 | 23.75 | 7.08 | 7.53 | 7.79 | 3.40 | ||
| SNAP | 12.13 | 13.75 | 13.32 | 29.26 | 29.51 | 0.85 | ||
| Paired | Bowtie 2 | 57.52 | 61.35 | 6.67 | 3.27 | 3.66 | 12.02 | |
| BWA-MEM | 57.93 | 63.38 | 9.41 | 7.87 | 8.26 | 4.87 | ||
| SNAP | 11.28 | 14.42 | 27.69 | 30.21 | 30.55 | 1.14 | ||
| ERR050083 | Unpaired | Bowtie 2 | 23.02 | 24.75 | 7.55 | 3.26 | 3.53 | 8.28 |
| BWA-MEM | 24.60 | 26.08 | 6.03 | 7.75 | 8.01 | 3.33 | ||
| SNAP | 12.23 | 13.73 | 12.31 | 29.26 | 29.51 | 0.85 | ||
| Paired | Bowtie 2 | 63.60 | 67.40 | 6.00 | 3.27 | 3.66 | 11.96 | |
| BWA-MEM | 61.58 | 67.52 | 9.62 | 7.92 | 8.31 | 4.83 | ||
| SNAP | 11.95 | 14.68 | 22.86 | 30.21 | 30.55 | 1.14 | ||