Fig. 2
From: A tandem simulation framework for predicting mapping quality
CSED for various aligners and references. Cumulative squared-error difference plot from running Qtip with various reference genomes and read aligners. The input reads are Mason-simulated Illumina-like 100 nt (left) and 250 nt (right) samples, each consisting of 4 million reads/pairs. The horizontal axis indicates the cumulative number of reads/ends passing the threshold, with the left-hand extreme corresponding to a high mapping-quality threshold and the right-hand extreme corresponding to a low threshold. Results for unpaired samples are shown on top, and paired on bottom. CSED cumulative squared-error difference