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Table 1 Number of genes found in the Hammer dataset on a 5% FDR level in the limma-voom analysis

From: stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Procedure t1 t2 Interaction Stage I only Unique genes
Standard 7125 6589 0 NA 8199
Stage-wise 6890 6574 665 85 7901
  1. We considered 12,893 genes in the analysis