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Table 1 Number of genes found in the Hammer dataset on a 5% FDR level in the limma-voom analysis

From: stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Procedure

t1

t2

Interaction

Stage I only

Unique genes

Standard

7125

6589

0

NA

8199

Stage-wise

6890

6574

665

85

7901

  1. We considered 12,893 genes in the analysis
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Genome Biology

ISSN: 1474-760X

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