Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

Table 2 Summary of overlap between enhancer candidates and TEs

		TE within enhancer candidate			Enhancer candidate entirely within TE			Enhancer candidate 80% within TE			Any overlap
	All	LTR	TIR	Helitron	LTR	TIR	Helitron	LTR	TIR	Helitron	LTR	TIR	Helitron
V2-IST	398	0	1 (0.2%)	0	83 (20.9%)	1 (0.2%)	10 (2.5%)	90 (22.6%)	1 (0.2%)	12 (3%)	110 (27.6%)	10 (2.5%)	17 (4.3%)
Husk	1320	0	7 (0.5%)	1 (0.1%)	202 (15.3%)	9 (0.7%)	56 (4.2%)	212 (16.1%)	9 (0.7%)	62 (4.7%)	261 (19.8%)	28 (2.1%)	88 (6.7%)

Number of enhancer candidates overlapping fully, by 80% of their length, or at least 1 bp with the TEs indicated. Percentages (in parenthesis) indicate the percent of intergenic enhancer candidates within each category. LTR long terminal repeats, TIR terminal inverted repeats. ‘All’ indicates all enhancer candidates

ISSN: 1474-760X