Skip to main content

Table 1 Intergenic regions of interest

From: Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

Tissue

All

Overlapping with LUMRs

Overlapping with H3K9ac

(A) Number of intergenic DHSs

V2-IST

7802

7653 (98.1%)

344 (4.4%)

Husk

7123

6997 (97.4%)

1505 (21.1%)

Common

5130

5013 (97.7%)

202 (3.9%)

Total

9212

9057 (98.3%)

2030 (22.0%)

(B) Number of intergenic H3K9ac enriched regions peaks

Tissue

All

Overlapping with LUMRs

Overlapping with DHSs

V2-IST

3115

3093 (99.3%)

323 (10.4%)

Husk

6213

6170 (99.3%)

998 (16.1%)

Common

2668

2652 (99.4%)

184 (6.9%)

Total

6511

6466 (99.3%)

1454 (22.3%)

  1. (A) DHSs and (B) H3K9ac-enriched regions and number (and percentage in parentheses) of these regions overlapping with other features (LUMRs, H3K9ac or DHSs) in each tissue (V2-IST and Husk), common to both tissues (Common) and the sum of the tissues (Total)