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Fig. 6 | Genome Biology

Fig. 6

From: A comparative evaluation of genome assembly reconciliation tools

Fig. 6

Results for the eight assembly reconciliation tools. They were given as input (1) chromosomes 4 and 15 of the yeast genome and (2) a flawed version of (1) produced by RSVSim containing a deletion in chromosome 4 (top row), an inversion in chromosome 4 (middle row), or a translocation from chromosome 4 to chromosome 15 (bottom row). (1) and (2) are the first two rows in each plot. Decipher was used to detect synteny blocks between the reference and the outputs and to generate synteny plots displayed as gradients. When the reference and output disagree, the gradients are interrupted. Gray regions indicate blocks that do not match the reference

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