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Fig. 2 | Genome Biology

Fig. 2

From: CIDR: Ultrafast and accurate clustering through imputation for single-cell RNA-seq data

Fig. 2

Performance evaluation with simulated data. Simulated scRNA-seq data set parameters: three cell types, 50 cells in each cell type, 20,000 non-differentially expressed features, 150 differentially expressed features and ten markers for each cell type. The three colors denote the three true cell types; while the different plotting symbols denote the clusters output by each algorithm. ae Clustering output for each of the five compared algorithms. f The adjusted rand index is used to compare the accuracy of the clustering output for each of the compared algorithms. PC principal coordinates

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