Table 1 Heterozygous SNPs identified as allele-specific and the correspondent cell lines and alleles in the FAIRE-seq data set

rs2373062

2

218322137

G

C

T47D-G

0.76

DIRC3

Intron

rs9682063

3

4737842

A

G

T47D-G

0.34

ITPR1

Intron

rs9292122

5

56087910

G

A

T47D-G

0.81

Intergenic

rs201314815

7

144115683

C

T

T47D-T

0.28

Intergenic

rs201949580

7

144115698

T

G

T47D-G

0.30

Intergenic

rs200312388

7

144115704

T

G

T47D-G

0.29

Intergenic

rs200496470

8

128323987

A

G

T47D-G

0.15

CASC8

Intron

rs111929748

11

69379287

G

T

T47D-T

0.32

Intergenic

rs12939887

17

53162672

A

G

T47D-A

0.67

STXBP4

Intron

rs72650670

1

114394681

G

A

MDAMB134-G

0.76

PTPN22

Coding

rs116782319

5

158260122

A

T

MDAMB134-T

0.33

EBF1

Intron

rs12670370

7

144118594

C

A

MDAMB134-C

0.79

Intergenic

rs2392922

8

129166840

A

G

MDAMB134-A

0.79

Intergenic

rs17793170

8

129205679

G

A

MDAMB134-A

0.33

Intergenic

rs2666763

10

22101608

G

A

MDAMB134-A

0.29

DNAJC1

Intron

rs2941733

10

22241656

T

C

MDAMB134-T

0.74

DNAJC1

Intron

rs4752570

10

123337066

T

C

MDAMB134-C

0.32

FGFR2

Intron

rs2912780

10

123337117

C

T

MDAMB134-C

0.69

FGFR2

Intron

rs2912779

10

123337182

T

C

MDAMB134-T

0.72

FGFR2

Intron

rs2981579

10

123337335

A

G

MDAMB134-A

0.71

FGFR2

Intron

rs2912778

10

123338654

G

A

MDAMB134-G

0.73

FGFR2

Intron

rs11200017

10

123339685

G

A

MDAMB134-A

0.26

FGFR2

Intron

rs2981578

10

123340311

C

T

MDAMB134-C

0.88

FGFR2

Intron

rs11599804

10

123340664

G

A

MDAMB134-A

0.16

FGFR2

Intron

rs34032268

10

123341525

A

C

MDAMB134-C

0.19

FGFR2

Intron

rs2936870

10

123348902

T

C

MDAMB134-T

0.69

FGFR2

Intron

rs3135718

10

123353869

C

T

MDAMB134-C

0.67

FGFR2

Intron

rs112536831

19

17424329

G

A

MDAMB134-G

0.75

DDA1

Intron

rs113207944

19

17438923

C

T

MDAMB134-C

0.74

ANO8

Intron

rs10416361

19

44294617

A

G

MDAMB134-A

0.75

Intergenic