Table 1 Genome assembly and annotation summary

 No. sequences (> = 1 kb)

13,407

4018

12,969

 Largest scaffold

1,018,155

2,199,663

3,073,041

 Total length

354,698,803

347,304,760

541,675,471

 Total length (> = 1 kb)

354,698,803

347,300,841

532,843,107

 Scaffold N50

164,460

435,781

570,863

 Contig N50

59,051

71,400

28,209

 GC%

30.19

30.03

29.69

 # Ns

11,562,637

1,836,185

36,934,320

 Median kmer coverage

44×

51×

NA

 CEGMA (% complete/partial)

94.76/98.39

94.35/98.39

93.15/97.98

 Gene count (Coding)

18,433

18,529

36,939

 Total transcripts

30,247

30,127

36,939

 Transcripts per gene

1.64

1.63

1.00

 Transcript mean size complementary DNA (bp)

2119.36

2163.47

1964.11