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Table 3 List of the top 15 pregnancy-depressed pouch tissue genes

From: The genome of the Gulf pipefish enables understanding of evolutionary innovations

Gene ID Fold change CPM p value Gene description KO ID
SSCG00000006879 27.36 56.49 7.91E-43 Serine/threonine-protein kinase WNK2 K08867
SSCG00000018539 12.37 15.96 2.04E-26 FXYD domain-containing ion transport regulator 12  
SSCG00000007973 4.73 53.34 1.66E-24 A disintegrin and metalloproteinase with thrombospondin motifs 6, partial K08621
SSCG00000013585 10.78 19.10 1.07E-23 Tetratricopeptide repeat protein 18  
SSCG00000005985 214.58 652.27 7.29E-23 patristacin, partial K08076
SSCG00000008728 14.12 6.03 2.22E-22 Uridine-cytidine kinase-like 1 K00876
SSCG00000000969 4.32 19.82 1.25E-17 ras-like protein family member 11A K07852
SSCG00000017729 6.14 359.52 1.71E-17 nidogen-2-like isoform X5 K06826
SSCG00000004506 6.00 12.98 4.08E-17 syntaxin-2-like isoform X1 K08486
SSCG00000010275 14.47 3.28 1.00E-16 acid-sensing ion channel 1  
SSCG00000016046 6.75 8.51 1.51E-16 leucine-rich repeat-containing protein 4-like K16351
SSCG00000014649 10.15 7.67 1.77E-16 homeobox protein MSX-2-like K09341
SSCG00000019217 66.66 3.26 1.82E-16 leucine-rich repeat-containing protein 3-like  
SSCG00000007661 5.19 24.20 2.23E-16 cytochrome P450 27C1-like K17951
SSCG00000005388 19.81 1.44 5.60E-16 glutamate receptor ionotropic, delta-2 isoform X5 K05207
  1. Included are the fold change (non-pregnant/pregnant), average expression level across 12 pouch libraries in copies per million (CPM), edgeR negative binomial exact test p value, gene description from top BLASTP hit, and the assigned KEGG orthology ID for each pipefish gene. See Additional file 2 SH2 for the full list