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Table 3 Contigs with a likely viral/bacteriophage origin/function reconstructed from the metatranscriptomic data

From: IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Sample Contig ID* Contig length Average contig depth of coverage Gene product Average gene depth of coverage
HF1 Contig_34 6468 20927 Virus coat protein (TMV like) 30668
Viral movement protein (MP) 26043
RNA-dependent RNA polymerase 22578
Viral methyltransferase 18817
Contig_13948 2074 46 RNA-dependent RNA polymerase 41
Viral movement protein (MP) 56
WW2 Contig_6405 4062 46 Tombusvirus p33 43
Viral RNA-dependent RNA polymerase 42
Viral coat protein (S domain) 36
Contig_7409 3217 21 Viral RNA-dependent RNA polymerase 18
Viral coat protein (S domain) 21
Contig_7872 2955 77 Hypothetical protein 112
Phage maturation protein 103
  1. *Contigs of ≥1 kb and average depth of coverage ≥20 were selected