IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Table 3 Contigs with a likely viral/bacteriophage origin/function reconstructed from the metatranscriptomic data

Sample	Contig ID*	Contig length	Average contig depth of coverage	Gene product	Average gene depth of coverage
HF1	Contig_34	6468	20927	Virus coat protein (TMV like)	30668
				Viral movement protein (MP)	26043
				RNA-dependent RNA polymerase	22578
				Viral methyltransferase	18817
	Contig_13948	2074	46	RNA-dependent RNA polymerase	41
	Contig_13948	2074	46	Viral movement protein (MP)	56
WW2	Contig_6405	4062	46	Tombusvirus p33	43
				Viral RNA-dependent RNA polymerase	42
				Viral coat protein (S domain)	36
	Contig_7409	3217	21	Viral RNA-dependent RNA polymerase	18
	Contig_7409	3217	21	Viral coat protein (S domain)	21
	Contig_7872	2955	77	Hypothetical protein	112
	Contig_7872	2955	77	Phage maturation protein	103

ISSN: 1474-760X