Skip to main content

Table 2 Mapping statistics for human microbiome samples

From: IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

Reference

Average MG pairs mapping (%)

Average MT pairs mapping (%)

IGC

70.91

53.57

IMP

70.25

86.21

IMP-megahit

70.62

83.33

IMP_MG

68.08

58.54

MetAMOS_MG

57.31

37.34

MOCAT_MG

36.73

36.68

IMP + IGC

92.66

95.77

IMP-megahit + IGC

92.80

93.24

  1. Average fractions (%) of properly paired reads from the human microbiome datasets (HF1–5) mapping to various references, including IMP-based iterative co-assemblies (IMP and IMP-megahit) and single-omic co-assemblies (IMP_MG, MetAMOS_MG, and MOCAT_MG) as well as the IGC reference database. IMP + IGC and IMP-megahit + IGC reports the total number of properly paired reads mapping to IMP-based iterative co-assemblies and/or the IGC reference database. Refer to Additional file 2: Table S3 for detailed information
Back to article page

Genome Biology

ISSN: 1474-760X

Contact us