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Table 1 Statistics of iterative assemblies performed on MG and MT datasets

From: IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses

   MG iterative assembly MT iterative assembly
Dataset Iteration Number of contigs (≥1 kb) Cumulative length of assembled contigs (bp) Number of predicted genes Number of mapped reads Number of contigs (all) Cumulative length of assembled contigs (bp) Number of predicted genes Number of mapped reads
SM Initial assembly 29063 182673343 186939 18977716 13436 8994518 13946 822718
1 16 483336 329 9515 1286 502535 1272 16038
2 6 213094 126 3425 48 18460 49 656
3 1 86711 47 1536 0 0 0 0
HF1 Initial assembly 27028 145938650 154760 20715368 40989 45300233 66249 17525586
1 15 966872 274 39839 2471 969614 2238 329400
2 −1 26822 5 1276 26 10315 24 45642
3 0 4855 0 172 3 1640 6 54788
WW1 Initial assembly 14815 77059275 81060 6513708 45118 22525759 49859 8423603
1 28 3146390 1136 73511 2115 723904 1589 529441
2 2 175634 114 4031 250 82048 201 13335
3 1 30032 16 572 31 10280 18 65866
BG Initial assembly 105282 545494441 593688 109949931 47628 27493690 60566 3754432
1 417 10998269 3902 456821 3956 1397409 3061 130131
2 5 335313 219 21647 717 250223 754 12766
3 7 79022 20 2511 24 9060 22 5827
  1. Results for all datasets available in Additional file 2: Table S2