Table 1 Statistics of iterative assemblies performed on MG and MT datasets
MG iterative assembly | MT iterative assembly | ||||||||
|---|---|---|---|---|---|---|---|---|---|
Dataset | Iteration | Number of contigs (≥1 kb) | Cumulative length of assembled contigs (bp) | Number of predicted genes | Number of mapped reads | Number of contigs (all) | Cumulative length of assembled contigs (bp) | Number of predicted genes | Number of mapped reads |
SM | Initial assembly | 29063 | 182673343 | 186939 | 18977716 | 13436 | 8994518 | 13946 | 822718 |
1 | 16 | 483336 | 329 | 9515 | 1286 | 502535 | 1272 | 16038 | |
2 | 6 | 213094 | 126 | 3425 | 48 | 18460 | 49 | 656 | |
3 | 1 | 86711 | 47 | 1536 | 0 | 0 | 0 | 0 | |
HF1 | Initial assembly | 27028 | 145938650 | 154760 | 20715368 | 40989 | 45300233 | 66249 | 17525586 |
1 | 15 | 966872 | 274 | 39839 | 2471 | 969614 | 2238 | 329400 | |
2 | −1 | 26822 | 5 | 1276 | 26 | 10315 | 24 | 45642 | |
3 | 0 | 4855 | 0 | 172 | 3 | 1640 | 6 | 54788 | |
WW1 | Initial assembly | 14815 | 77059275 | 81060 | 6513708 | 45118 | 22525759 | 49859 | 8423603 |
1 | 28 | 3146390 | 1136 | 73511 | 2115 | 723904 | 1589 | 529441 | |
2 | 2 | 175634 | 114 | 4031 | 250 | 82048 | 201 | 13335 | |
3 | 1 | 30032 | 16 | 572 | 31 | 10280 | 18 | 65866 | |
BG | Initial assembly | 105282 | 545494441 | 593688 | 109949931 | 47628 | 27493690 | 60566 | 3754432 |
1 | 417 | 10998269 | 3902 | 456821 | 3956 | 1397409 | 3061 | 130131 | |
2 | 5 | 335313 | 219 | 21647 | 717 | 250223 | 754 | 12766 | |
3 | 7 | 79022 | 20 | 2511 | 24 | 9060 | 22 | 5827 | |