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Table 1 Iberian lynx genetic diversity

From: Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx

 

Doñana

Andújar

All

N (chromosomes)

8

14

22

Number of SNPs

625,552

1,383,709

1,587,509

H O per SNP

0.178

0.317

0.266

Watterson’s Θ (%)a

0.012

0.022

0.022

H E per SNP

0.167

0.316

0.336

H E per site (Ï€) (%)a

0.013

0.025

0.026

Ï€ S (%)b

0.014

0.026

0.028

Ï€ N /Ï€ S b

0.287

0.286

0.287

  1. aPer site statistics consider the universe of callable sites (2,021,732,768).
  2. bCoding sequence estimates are based on 14,028 coding sequences larger than 200 nucleotides.
  3. H O observed heterozygosity, H E expected heterozygosity under Hardy–Weinberg equilibrium, π nucleotide diversity, π S nucleotide diversity at synonymous sites, π N nucleotide diversity at non-synonymous sites