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Fig. 4 | Genome Biology

Fig. 4

From: Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression

Fig. 4

Comparison of MCP-counter with previously published methods. a MCP-counter scores (left) and CIBERSORT estimates (right) on simulated mRNA mixtures where five immune populations are introduced in equal proportions, with a varying proportion of tumor cells (x-axis). Error bars represent standard error estimates. b Heat maps showing scores computed with TM sets from three sources (Pred columns). The Truth columns indicate the status of the sample for each TM set. Thus, the performance of a TM set is indicated by the concordance between its Pred and Truth columns. The complete sets of markers, which do not use information from validation series, were used for MCP-counter

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